BLAST DeepSeq is an AI-powered in-silico analysis tool designed to automate and streamline DNA/RNA assay sequence analysis and reporting for life sciences research and molecular diagnostics. It integrates advanced BLAST algorithms, taxonomy-based filtering, and mutation analysis to deliver accurate, rapid results.

BLAST DeepSeq is useful for molecular diagnostics companies, clinical laboratories, assay developers, bioinformatics teams, and research laboratories that need to validate or analyze oligonucleotide, primer, probe, and amplicon sequences.

The tool uses NCBI database queries combined with custom AI-driven rules to:

• Detect sequence matches
• Identify mismatches and mutations
• Filter results by taxonomy
• Generate detailed reports for assay performance and inclusivity/exclusivity checks

• Primer, probe, and amplicon validation
• Sequence Alignment
• Inclusivity and exclusivity verification
• Mismatch and mutation identification
• Taxonomy-based filtering
• Accession grouping and classification based on qPCR detection prediction

BLAST DeepSeq is available as a cloud-hosted solution. This ensures fast database access, regular updates, and no local installation requirements.

While BLAST DeepSeq offers BLAST capabilities, it distinguishes itself by incorporating dedicated modules for primer and probe alignment, detection, inclusivity, and exclusivity. Rather than utilizing BLAST in conjunction with various sequence alignment and analysis tools, BLAST DeepSeq consolidates all analyses into a single, integrated platform. This streamlines the analytical process, enabling the completion of comprehensive analyses in minutes, rather than days or weeks. BLAST DeepSeq also generates reports to support your organization’s documentation needs.